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Index
A
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B
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C
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D
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G
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L
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M
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N
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P
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R
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S
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T
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W
A
AdvancedBBGeometry (class in menten_gcn.decorators)
,
[1]
append() (menten_gcn.DataHolder method)
apply_edge_mask() (in module menten_gcn.util)
apply_node_mask() (in module menten_gcn.util)
assert_mode() (menten_gcn.DataHolder method)
B
BareBonesDecorator (class in menten_gcn.decorators)
C
CACA_dist (class in menten_gcn.decorators)
,
[1]
cache_data() (menten_gcn.decorators.Decorator method)
CachedDataHolderInputGenerator (class in menten_gcn)
calc_edge_features() (menten_gcn.decorators.BareBonesDecorator method)
(menten_gcn.decorators.CACA_dist method)
(menten_gcn.decorators.CBCB_dist method)
(menten_gcn.decorators.Decorator method)
(menten_gcn.decorators.RosettaJumpDecorator method)
(menten_gcn.decorators.SameChain method)
(menten_gcn.decorators.SequenceSeparation method)
calc_node_features() (menten_gcn.decorators.BareBonesDecorator method)
(menten_gcn.decorators.ChiAngleDecorator method)
(menten_gcn.decorators.Decorator method)
(menten_gcn.decorators.DesignableSequence method)
(menten_gcn.decorators.PhiPsiRadians method)
(menten_gcn.decorators.Sequence method)
CBCB_dist (class in menten_gcn.decorators)
,
[1]
ChiAngleDecorator (class in menten_gcn.decorators)
,
[1]
cluster() (in module menten_gcn.util)
cluster_all_resids() (in module menten_gcn.util)
D
DataHolder (class in menten_gcn)
DataHolderInputGenerator (class in menten_gcn)
DataMaker (class in menten_gcn)
Decorator (class in menten_gcn.decorators)
DecoratorDataCache (class in menten_gcn)
describe_edge_features() (menten_gcn.decorators.BareBonesDecorator method)
(menten_gcn.decorators.CACA_dist method)
(menten_gcn.decorators.CBCB_dist method)
(menten_gcn.decorators.Decorator method)
(menten_gcn.decorators.RosettaJumpDecorator method)
(menten_gcn.decorators.SameChain method)
(menten_gcn.decorators.SequenceSeparation method)
describe_node_features() (menten_gcn.decorators.BareBonesDecorator method)
(menten_gcn.decorators.ChiAngleDecorator method)
(menten_gcn.decorators.Decorator method)
(menten_gcn.decorators.DesignableSequence method)
(menten_gcn.decorators.PhiPsiRadians method)
(menten_gcn.decorators.Sequence method)
DesignableSequence (class in menten_gcn.decorators)
,
[1]
G
generate_input() (menten_gcn.DataMaker method)
generate_input_for_resid() (menten_gcn.DataMaker method)
generate_XAE_input_tensors() (menten_gcn.DataMaker method)
get_N_F_S() (menten_gcn.DataMaker method)
get_version_name() (menten_gcn.decorators.BareBonesDecorator method)
(menten_gcn.decorators.CACA_dist method)
(menten_gcn.decorators.CBCB_dist method)
(menten_gcn.decorators.ChiAngleDecorator method)
(menten_gcn.decorators.Decorator method)
(menten_gcn.decorators.DesignableSequence method)
(menten_gcn.decorators.PhiPsiRadians method)
(menten_gcn.decorators.Ref2015Decorator method)
(menten_gcn.decorators.Rosetta_Ref2015_OneBodyEneriges method)
(menten_gcn.decorators.Rosetta_Ref2015_TwoBodyEneriges method)
(menten_gcn.decorators.RosettaJumpDecorator method)
(menten_gcn.decorators.SameChain method)
(menten_gcn.decorators.Sequence method)
(menten_gcn.decorators.SequenceSeparation method)
L
load_from_file() (menten_gcn.DataHolder method)
M
make_and_apply_edge_mask() (in module menten_gcn.util)
make_and_apply_node_mask() (in module menten_gcn.util)
make_data_cache() (menten_gcn.DataMaker method)
make_edge_mask() (in module menten_gcn.util)
make_NEENEENEE_XE_conv() (in module menten_gcn.playground)
make_NENE_XE_conv() (in module menten_gcn.playground)
make_node_mask() (in module menten_gcn.util)
MDTrajPoseWrapper (class in menten_gcn)
N
n_edge_features() (menten_gcn.decorators.BareBonesDecorator method)
(menten_gcn.decorators.CACA_dist method)
(menten_gcn.decorators.CBCB_dist method)
(menten_gcn.decorators.ChiAngleDecorator method)
(menten_gcn.decorators.Decorator method)
(menten_gcn.decorators.DesignableSequence method)
(menten_gcn.decorators.RosettaJumpDecorator method)
(menten_gcn.decorators.SameChain method)
(menten_gcn.decorators.Sequence method)
(menten_gcn.decorators.SequenceSeparation method)
n_node_features() (menten_gcn.decorators.BareBonesDecorator method)
(menten_gcn.decorators.ChiAngleDecorator method)
(menten_gcn.decorators.Decorator method)
(menten_gcn.decorators.DesignableSequence method)
(menten_gcn.decorators.PhiPsiRadians method)
(menten_gcn.decorators.RosettaJumpDecorator method)
(menten_gcn.decorators.SameChain method)
(menten_gcn.decorators.Sequence method)
(menten_gcn.decorators.SequenceSeparation method)
P
PhiPsiRadians (class in menten_gcn.decorators)
,
[1]
R
Ref2015Decorator (class in menten_gcn.decorators)
,
[1]
Rosetta_Ref2015_OneBodyEneriges (class in menten_gcn.decorators)
,
[1]
Rosetta_Ref2015_TwoBodyEneriges (class in menten_gcn.decorators)
,
[1]
RosettaHBondDecorator (class in menten_gcn.decorators)
,
[1]
RosettaJumpDecorator (class in menten_gcn.decorators)
,
[1]
RosettaPoseWrapper (class in menten_gcn)
RosettaResidueSelectorDecorator (class in menten_gcn.decorators)
,
[1]
RosettaResidueSelectorFromXML (class in menten_gcn.decorators)
,
[1]
S
SameChain (class in menten_gcn.decorators)
,
[1]
save_to_file() (menten_gcn.DataHolder method)
Sequence (class in menten_gcn.decorators)
,
[1]
SequenceSeparation (class in menten_gcn.decorators)
,
[1]
SimpleBBGeometry (class in menten_gcn.decorators)
,
[1]
StandardBBGeometry (class in menten_gcn.decorators)
,
[1]
summary() (menten_gcn.DataMaker method)
T
trRosettaEdges (class in menten_gcn.decorators)
,
[1]
W
WrappedPose (class in menten_gcn)
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